How To: Once the fight starts, have Link run to the top portion of the room. Wait for Knucklemaster to attempt to ram into Link, then use the Tornado Rod just before he hits. If done correctly Link will appear outside the Skull Woods in the area where the portrait of Seres is.
Notes: This glitch causes the Heart Container Knucklemaster yields to be unobtainable.
How To: In the Miner's House, have Link pick up a rock. Next, press the R button to activate his shield. If done correctly, Link will be holding the rock with his sword and shield out. If the R button is held down, Link will raise his shield, and the rock will be in his chest unless the R button is released or the rock is thrown. This glitch will not work if Link's sword and shield are out before picking it up, however.
A Link Between Objects
Effect: Have Link get stuck in-between some hedges and a building.
How To: First, go to Fortune's Choice in Kakariko Village. Just next to the sign, face northwest and press the L button to activate the Pegasus Boots. If done correctly, Link will run in-between the hedge and the building and will violently bump into them. This glitch is cancelled if the Pegasus Boots are deactivated.